ProGénoMix
PLATFORM
Nos Missions
- Innover en spectrométrie de masse pour l’analyse des protéines dans le domaine de la protéomique, protéogénomique et métaprotéomique
- Déveloper de nouveaux concepts pour la découverte de biomarqueurs et la détection de pathogènes
- Proposer une offre de service aux partenaires académiques en mode collaboratif pour la caractérisation moléculaire approfondie de tout système biologique : animaux, plantes, champignons, parasites, bactéries, archées, microbiotes
- Proposer une offre de service de recherche et service analytique pour des partenaires industriels intéressés pour caractériser des biothérapies et vaccins, l’identification et le dosage de biomarqueurs multi-omiques, la caractérisation taxonomique et fonctionnelle de microbiotes ou d’isolats, l’identification de contaminants
Services
Analyse taxonomique
et fonctionnelle
de microbiotes
Multi-omiques & meta-omiques
jeux de données protéomiques publics (PRIDE)
0
Protéines identifiées
0
Projets achevés depuis 2015
0
Publications depuis 2015
0
Couts
Devis défini sur-mesure en fonction des opérations à conduire après définition de votre cahier des charges (Cout marginal pour les académiques & cout complet pour les industriels)
Couts en protéogénomique pour les académiques en mode collaboratif
-
Assemblage transcrits RNA
840 € HT -
Protéomique
170-475 € HT en fonction de la profondeur d’analyse -
Protéotypage simple
85 € HT -
Annotation fonctionnelle
265 € HT
Couts d’analyses de microbiotes pour les académiques en mode collaboratif
-
Métaprotéomique directe
265 € HT -
Interprétation dirigée par données métagénomiques
475 € HT
Prêt à collaborer ?
Notre équipe de permanents à votre service
Publications Récentes
19454560
4R6DSRQT
1
apa
5
date
desc
20
https://progenomix.fr/wp-content/plugins/zotpress/
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Armengaud, J. (2026). Emphasizing the importance of interactions and networks in proteomics. Journal of Proteomics, 105599. https://doi.org/10.1016/j.jprot.2026.105599
Al Siblani, S., Armengaud, J., & Lozano, C. (2026). Influence of Bead Chemistry and Protein-to-Bead Ratio on the Efficiency of Solid-Phase Proteolysis. Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.5c00630
Charlier, P., Lentignac, L., & Armengaud, J. (2025). An oral microbiome from 1929: Paleoproteomic study of a toothbrush belonging to Georges Clemenceau (1841-1929). Journal of Stomatology, Oral and Maxillofacial Surgery, 127(3), 102691. https://doi.org/10.1016/j.jormas.2025.102691
Mellere, L., Bava, A., Armengaud, J., Berini, F., Marinelli, F., Varese, G. C., Spina, F., & Beltrametti, F. (2025). Unravelling the Potential of Fungal Division of Labour in the Laccase Producer Coriolopsis trogii MUT3379 Through Protoplast Formation and Regeneration. Journal of Fungi, 11(12), 890. https://doi.org/10.3390/jof11120890
Charlier, P., Neuzillet, Y., Le Gendre, R., & Armengaud, J. (2025). Paleoproteomic study of blood residues shows that Voltaire (1778) died of perforated bladder squamous cell cancer with peritoneal extension. BJU International, 136(6), 1002–1003. https://doi.org/10.1111/bju.70003
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Armengaud, J. (2026). Emphasizing the importance of interactions and networks in proteomics. Journal of Proteomics, 105599. https://doi.org/10.1016/j.jprot.2026.105599
Al Siblani, S., Armengaud, J., & Lozano, C. (2026). Influence of Bead Chemistry and Protein-to-Bead Ratio on the Efficiency of Solid-Phase Proteolysis. Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.5c00630
Charlier, P., Lentignac, L., & Armengaud, J. (2025). An oral microbiome from 1929: Paleoproteomic study of a toothbrush belonging to Georges Clemenceau (1841-1929). Journal of Stomatology, Oral and Maxillofacial Surgery, 127(3), 102691. https://doi.org/10.1016/j.jormas.2025.102691
Mellere, L., Bava, A., Armengaud, J., Berini, F., Marinelli, F., Varese, G. C., Spina, F., & Beltrametti, F. (2025). Unravelling the Potential of Fungal Division of Labour in the Laccase Producer Coriolopsis trogii MUT3379 Through Protoplast Formation and Regeneration. Journal of Fungi, 11(12), 890. https://doi.org/10.3390/jof11120890
Charlier, P., Neuzillet, Y., Le Gendre, R., & Armengaud, J. (2025). Paleoproteomic study of blood residues shows that Voltaire (1778) died of perforated bladder squamous cell cancer with peritoneal extension. BJU International, 136(6), 1002–1003. https://doi.org/10.1111/bju.70003
Tanca, A., Schallert, K., Grenga, L., Peters, S. L., Abbondio, M., De Diego, L., Deledda, M. A., Haange, S.-B., Miotello, G., Sáenz, J. S., Wolf, M., Bastida, F., Devos, S., Hernandez-Raquet, G., Seifert, J., Wilmes, P., Van Den Bossche, T., Kunath, B. J., Heyer, R., … Uzzau, S. (2025). Critical Assessment of MetaProteome Investigation 2 (CAMPI-2): multi-laboratory assessment of sample processing methods to stabilize fecal microbiome for functional analysis. Microbiome, 13(1), 245. https://doi.org/10.1186/s40168-025-02248-x
Gaston-Breton, R., Bouzid, A., Antipushina, E., Altaie, A. M., Armengaud, J., Costa, N., Sarkadi, B., Apati, A., Harati, R., Sharaev, M., Disdier, C., Hamoudi, R., & Mabondzo, A. (2025). Translational biomarkers of hypoxic brain injury uncovered in CSF secreting human choroid plexus organoids. Fluids and Barriers of the CNS, 22(1), 117. https://doi.org/10.1186/s12987-025-00731-z
Picard, L., Turpault, M.-P., Armengaud, J., & Uroz, S. (2025). Decoding Collimonas pratensis PMB3(1) responses during biotite interaction and dissolution: a multi-omics and geochemical perspective. Applied and Environmental Microbiology, 91(10), e0070425. https://doi.org/10.1128/aem.00704-25
Charlier, P., Pelzer, V., Augias, A., Slimani, L., Chaussain, C., Poupon, J., Popescu, S.-M., Kielbasa, M., Annane, D., & Armengaud, J. (2025). Paleoproteomics reveals chromoblastomycosis as possible cause of King of France Louis XIV’s death (1715). Annales Pharmaceutiques Francaises, S0003-4509(25)00150-6. https://doi.org/10.1016/j.pharma.2025.10.005
Pistol, A., Armengaud, J., Carrot, G., Tortech, L., & Alpha-Bazin, B. (2025). Proteomics reveals the key molecular players in Escherichia coli exposed to the antimicrobial cationic polymer 6-6 polyionene. Journal of Hazardous Materials, 497, 139602. https://doi.org/10.1016/j.jhazmat.2025.139602
Grenga, L., Arntzen, M. Ø., & Armengaud, J. (2025). Metaproteomics and Meta-Omics to Decrypt Microbiome Functionality. Proteomics, 25(20), 6–7. https://doi.org/10.1002/pmic.70029
Oumarou Hama, H., Boualam, M., Armengaud, J., Drancourt, M., Aboudharam, G., Bălășescu, A., & Radu, V. (2025). Diagnosing plague in 17th century camelids from Romania along historical Silk Routes. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases, 134, 105814. https://doi.org/10.1016/j.meegid.2025.105814
Baratange, C., Rocha de Almeida, T., Armengaud, J., Bonnard, I., David, E., Delahaut, L., Gaillet, V., Guillon, E., Kielbasa, M., Loizeau, J.-L., Maurin, N., Sayen, S., & Cosio, C. (2025). Molecular and genotoxic effects of carbamazepine and methylmercury on the gonads of Dreissena polymorpha. Aquatic Toxicology, 287, 107493. https://doi.org/10.1016/j.aquatox.2025.107493
Gallois, N., Gréau, L., Zumsteg, J., Huguet, S., Blaudez, D., Villette, C., Paysant-Le Roux, C., Armengaud, J., Heintz, D., Alpha-Bazin, B., & Cébron, A. (2025). Comprehensive multi-omics integration to unravel poplar molecular responses to a phenanthrene contamination gradient. Journal of Hazardous Materials, 495, 138826. https://doi.org/10.1016/j.jhazmat.2025.138826
Loiseau, L., De Visch, N., Vergnes, A., Armengaud, J., Vincent, M. S., & Ezraty, B. (2025). Repair of oxidized methionine residues in the chaperone Spy maintains periplasmic proteostasis under chlorite stress in Escherichia coli. PLoS Biology, 23(9), e3003411. https://doi.org/10.1371/journal.pbio.3003411
Nouche, C. B., Sar, J., Cochet, C., Armengaud, J., Turpault, M.-P., & Uroz, S. (2025). Phosphate availability modulates the weathering effectiveness and molecular response of Caballeronia mineralivorans PML1(12). BMC Microbiology, 25(1), 555. https://doi.org/10.1186/s12866-025-04221-y
Röllig, R., Lebreton, A., Grenga, L., Cresswell, R., Lett, S., Tryfona, T., Navarro, D., Lambert, J., Grisel, S., Gimbert, I., Martens, H. J., Miotello, G., Yu, X., Drula, E., Rosso, M.-N., Tarrago, L., Henrissat, B., Johansen, K., Dupree, R., … Berrin, J.-G. (2025). Wood decay under anoxia by the brown-rot fungus Fomitopsis pinicola. Nature Communications, 16(1), 7352. https://doi.org/10.1038/s41467-025-62567-3
Charlier, P., Armengaud, J., Poupon, J., Deo, S., & Astier, A. (2025). Can Napoleon’s skin disease and treatment be identified from paleoproteomic analyses of his last bathtub (1821)? Journal of the European Academy of Dermatology and Venereology: JEADV, 39(8), 1382–1384. https://doi.org/10.1111/jdv.20517
Besse, A., Menetrey, Q., Jean-Pierre, V., Huc-Brandt, S., Aujoulat, F., Dupont, C., Chiron, R., Armengaud, J., Jumas-Bilak, E., Molle, V., Grenga, L., & Marchandin, H. (2025). Achromobacter xylosoxidans modulates Pseudomonas aeruginosa virulence through a complex multi-target competition. Scientific Reports, 15(1), 23392. https://doi.org/10.1038/s41598-025-06075-w
Van Den Bossche, T., Armengaud, J., Benndorf, D., Blakeley-Ruiz, J. A., Brauer, M., Cheng, K., Creskey, M., Figeys, D., Grenga, L., Griffin, T. J., Henry, C., Hettich, R. L., Holstein, T., Jagtap, P. D., Jehmlich, N., Kim, J., Kleiner, M., Kunath, B. J., Malliet, X., … Metaproteomics Initiative. (2025). The microbiologist’s guide to metaproteomics. iMeta, 4(3), e70031. https://doi.org/10.1002/imt2.70031
Armengaud, J. (2025). The dawn of the revolution that will allow us to precisely describe how microbiomes function. Journal of Proteomics, 316, 105430. https://doi.org/10.1016/j.jprot.2025.105430
Armengaud, J., Cardon, T., Cristobal, S., Matallana-Surget, S., & Bertile, F. (2025). Novel model organisms and proteomics for a better biological understanding. Journal of Proteomics, 316, 105441. https://doi.org/10.1016/j.jprot.2025.105441
Heyer, R., Wolf, M., Benndorf, D., Uzzau, S., Seifert, J., Grenga, L., Pabst, M., Schmitt, H., Mesuere, B., Van Den Bossche, T., Haange, S.-B., Jehmlich, N., Di Luca, M., Ferrer, M., Serrano-Villar, S., Armengaud, J., Bode, H. B., Hellwig, P., Masselot, C. R., … Wilmes, P. (2025). Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes. Microbiome, 13(1), 134. https://doi.org/10.1186/s40168-025-02119-5
Vincent, M., Boubakri, H., Fournier, P., Parisot, N., Pétriacq, P., Cassan, C., Flandin, A., Miotello, G., Armengaud, J., Hay, A.-E., & Herrera-Belaroussi, A. (2025). Phytophthora alni Infection Reinforces the Defense Reactions in Alnus glutinosa-Frankia Roots to the Detriment of Nodules. Molecular Plant-Microbe Interactions: MPMI, 38(3), 463–478. https://doi.org/10.1094/MPMI-12-24-0160-R
Charlier, P., & Armengaud, J. (2025). Cranio-facial trauma diagnosis using paleo-proteotyping of a blood sample from Robespierre (1794). Annales Pharmaceutiques Francaises, 83(3), 445–448. https://doi.org/10.1016/j.pharma.2024.12.011
Duport, C., & Armengaud, J. (2025). Exoproteomic Evidence for BcTSPO-Mediated Regulation of Virulence Factors in Bacillus cereus. Proteomics, 25(7), e202400293. https://doi.org/10.1002/pmic.202400293
Armengaud, J. (2025). 2025: A historic moment for proteomics! Journal of Proteomics, 313, 105385. https://doi.org/10.1016/j.jprot.2025.105385
Lozano, C., & Armengaud, J. (2025). Sample Preparation and Processing for Quick, Universal, and Insightful Microbial Proteomics. Methods in Molecular Biology, 2884, 57–69. https://doi.org/10.1007/978-1-0716-4298-6_5
Javier-López, R., Kielbasa, M., Armengaud, J., & Birkeland, N.-K. (2025). Transcriptomic and proteomic insights into feather keratin degradation by Fervidobacterium. Frontiers in Microbiology, 16, 1509937. https://doi.org/10.3389/fmicb.2025.1509937
Gtari, M., Tisa, L. S., Palmer, M., & Armengaud, J. (2025). Editorial: Exploring the diversity, ecological significance, and systematics of uncultivated prokaryotic taxa. Frontiers in Microbiology, 16, 1604849. https://doi.org/10.3389/fmicb.2025.1604849
Dunyach-Remy, C., Pouget, C., Pers, Y.-M., Gaujoux-Viala, C., Demattei, C., Salipante, F., Grenga, L., Armengaud, J., Lavigne, J.-P., & Jorgensen, C. (2025). Participation of gut microbiota and bacterial translocation in chronic systemic inflammation in recently diagnosed rheumatoid arthritis patients. Current Research in Microbial Sciences, 8, 100366. https://doi.org/10.1016/j.crmicr.2025.100366
Dorbani, I., Armengaud, J., Carlin, F., & Duport, C. (2025). UV-C and hydration state drive pulsed light-induced proteome damage in Bacillus pumilus spores. Frontiers in Microbiology, 16, 1579161. https://doi.org/10.3389/fmicb.2025.1579161
Ramalho, J. C., Marques, I., Pais, I. P., Armengaud, J., Gouveia, D., Rodrigues, A. P., Dubberstein, D., Leitão, A. E., Rakočević, M., Scotti-Campos, P., Martins, S., Semedo, M. C., Partelli, F. L., Lidon, F. C., DaMatta, F. M., & Ribeiro-Barros, A. I. (2025). Stress resilience in Coffea arabica and Coffea canephora under harsh drought and/or heat conditions: selected genes, proteins, and lipid integrated responses. Frontiers in Plant Science, 16, 1623156. https://doi.org/10.3389/fpls.2025.1623156
Kergaravat, B., Kielbasa, M., Chabrière, É., Armengaud, J., Plener, L., & Daudé, D. (2024). Quorum Quenching Lactonase Alters Virulence of Pectobacterium atrosepticum and Reduces Maceration in Potatoes. Journal of Agricultural and Food Chemistry, 72(48), 26796–26808. https://doi.org/10.1021/acs.jafc.4c07881
Grenga, L., Øverlie Arntzen, M., & Armengaud, J. (2024). Special Issue on “Metaproteomics and meta-omics perspectives to decrypt Microbiome Functionality.” Proteomics, 24(23–24), e2400072. https://doi.org/10.1002/pmic.202400072
